PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB02G35790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 271aa    MW: 29022.8 Da    PI: 6.4289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB02G35790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.22.9e-13250455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  +h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  OB02G35790.1  2 THIAVERNRRRQMNEYLAILRSLMPEP---YVQRGDQASIVGGAIEFVKELE 50
                  8**************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-16167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.44E-12154No hitNo description
PROSITE profilePS5088814.627149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTHIAVERNR RRQMNEYLAI LRSLMPEPYV QRGDQASIVG GAIEFVKELE QQLQSLEAQK  60
RTLLPHHKSK CDDAMPTHNG GGSNAGGGCM ESTTTSNCSS SVTEDAQHVD APPLAQFFAY  120
PQYVWCHSPR DSAGATAASS SSSSPTAGLQ AEHRSGLADI EVSLVETHAS IRVMSPRRPG  180
QLLKMIAGLQ ALRLTVLHLN VTTLGSLVLY SLSVKVEEGC NLTTVDDIAA AVHHVLCIVD  240
AEVASEQLLA AGQLAATATA TAKREQAAYM Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606951e-154AK060695.1 Oryza sativa Japonica Group cDNA clone:001-030-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647713.10.0PREDICTED: transcription factor bHLH96
TrEMBLJ3LG120.0J3LG12_ORYBR; Uncharacterized protein
STRINGOB02G35790.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-56bHLH family protein